Variant report

Variant	rs73768036
Chromosome Location	chr5:80491022-80491023
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:80231930..80232621-chr5:80490670..80491259,2	MCF-7	breast:
2	chr5:80316222..80317107-chr5:80490719..80491566,2	MCF-7	breast:
3	chr5:79982298..79983182-chr5:80490793..80491491,3	K562	blood:
4	chr5:80007525..80008145-chr5:80490526..80491470,3	MCF-7	breast:
5	chr5:79982263..79983213-chr5:80490545..80491498,4	MCF-7	breast:
6	chr5:80007523..80008377-chr5:80490955..80491476,2	MCF-7	breast:
7	chr5:80403945..80404890-chr5:80490639..80491442,3	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs16878522	0.95[ASN][1000 genomes]
rs73768037	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024844	chr5:79862428-80860430	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:80464200-80528400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:80465200-80528200	Weak transcription	Ovary	ovary
3	chr5:80466000-80512600	Weak transcription	Gastric	stomach
4	chr5:80483600-80494200	Weak transcription	Right Atrium	heart
5	chr5:80484200-80497600	Weak transcription	Brain Substantia Nigra	brain
6	chr5:80485200-80496400	Weak transcription	Primary T cells from cord blood	blood
7	chr5:80485200-80516200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr5:80485400-80496600	Weak transcription	HepG2	liver
9	chr5:80488600-80495000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr5:80490200-80491400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr5:80490400-80491200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr5:80490400-80491400	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr5:80490400-80491400	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr5:80490400-80491800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr5:80490400-80491800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:80490400-80491800	Enhancers	Adipose Nuclei	Adipose
17	chr5:80490400-80491800	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr5:80490600-80491200	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr5:80490600-80491200	Enhancers	Primary T cells fromperipheralblood	blood
20	chr5:80490600-80491200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr5:80490600-80491200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr5:80490600-80491200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr5:80490600-80491200	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr5:80490600-80491200	Enhancers	Fetal Muscle Leg	muscle
25	chr5:80490600-80491200	Enhancers	Placenta	Placenta
26	chr5:80490600-80491200	Enhancers	NH-A	brain
27	chr5:80490600-80491400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr5:80490600-80491400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
29	chr5:80490600-80491400	Enhancers	Placenta Amnion	Placenta Amnion
30	chr5:80490600-80491400	Enhancers	Dnd41	blood
31	chr5:80490600-80491600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr5:80490600-80491600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr5:80490800-80491200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr5:80490800-80491200	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr5:80490800-80491200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
36	chr5:80490800-80491200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr5:80490800-80491200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr5:80490800-80491200	Enhancers	Liver	Liver
39	chr5:80490800-80491200	Flanking Active TSS	Brain Angular Gyrus	brain
40	chr5:80490800-80491200	Flanking Active TSS	Fetal Brain Female	brain
41	chr5:80490800-80491200	Active TSS	Fetal Kidney	kidney
42	chr5:80490800-80491200	Enhancers	Pancreas	Pancrea
43	chr5:80490800-80491200	Enhancers	Psoas Muscle	Psoas
44	chr5:80490800-80491200	Enhancers	Sigmoid Colon	Sigmoid Colon
45	chr5:80490800-80491200	Flanking Active TSS	Stomach Smooth Muscle	stomach
46	chr5:80490800-80491200	Enhancers	GM12878-XiMat	blood
47	chr5:80490800-80491400	Enhancers	Primary T helper naive cells from peripheral blood	blood
48	chr5:80490800-80491400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
49	chr5:80490800-80491400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr5:80490800-80491400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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