Variant report

Variant	rs73769121
Chromosome Location	chr5:79809341-79809342
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11949130	1.00[EUR][1000 genomes]
rs16877714	1.00[EUR][1000 genomes]
rs3943975	1.00[EUR][1000 genomes]
rs6151674	1.00[EUR][1000 genomes]
rs73123480	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028027	chr5:79694699-79841752	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79784800-79819400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr5:79785000-79822800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:79785200-79817600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr5:79790800-79811200	Weak transcription	Placenta	Placenta
5	chr5:79794800-79812800	Weak transcription	Esophagus	oesophagus
6	chr5:79798000-79812600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:79798200-79811600	Weak transcription	Spleen	Spleen
8	chr5:79799000-79817400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr5:79800000-79817000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr5:79800000-79825600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr5:79800200-79811400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr5:79800400-79812800	Weak transcription	Adipose Nuclei	Adipose
13	chr5:79800600-79825200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr5:79801400-79825400	Weak transcription	Pancreas	Pancrea
15	chr5:79801600-79818000	Weak transcription	Ovary	ovary
16	chr5:79802200-79820800	Weak transcription	Brain Cingulate Gyrus	brain
17	chr5:79802600-79820000	Weak transcription	Fetal Stomach	stomach
18	chr5:79805200-79824200	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr5:79805400-79816200	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr5:79806000-79816000	Weak transcription	Brain Angular Gyrus	brain
21	chr5:79806200-79810200	Weak transcription	Fetal Muscle Leg	muscle
22	chr5:79806200-79815800	Weak transcription	Brain Anterior Caudate	brain
23	chr5:79806200-79825600	Weak transcription	HSMMtube	muscle
24	chr5:79807400-79812800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr5:79807400-79817200	Weak transcription	Aorta	Aorta
26	chr5:79807400-79825600	Weak transcription	Osteobl	bone
27	chr5:79807600-79819000	Weak transcription	NHDF-Ad	bronchial
28	chr5:79808600-79811200	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr5:79808600-79824400	Weak transcription	Fetal Lung	lung
30	chr5:79809000-79810800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr5:79809000-79812400	Weak transcription	Hela-S3	cervix

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