Variant report

Variant	rs73771125
Chromosome Location	chr5:90234012-90234013
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12109698	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55908755	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55914710	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57830245	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58617853	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58790039	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58911687	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59167728	1.00[EUR][1000 genomes]
rs60125173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60272312	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60564653	1.00[AMR][1000 genomes]
rs6888277	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73771112	1.00[EUR][1000 genomes]
rs73771116	1.00[EUR][1000 genomes]
rs73771130	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73771134	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73771136	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73771155	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529544	chr5:89523963-90412409	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv517049	chr5:90003131-90262475	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90225800-90236200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:90225800-90244000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr5:90228400-90239200	Weak transcription	Aorta	Aorta
4	chr5:90228600-90235000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr5:90229400-90235600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr5:90229800-90235000	Weak transcription	Fetal Kidney	kidney
7	chr5:90229800-90235800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr5:90229800-90235800	Weak transcription	Fetal Stomach	stomach
9	chr5:90230000-90234600	Weak transcription	A549	lung
10	chr5:90230400-90265200	Weak transcription	K562	blood
11	chr5:90230800-90235200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:90230800-90235800	Weak transcription	HepG2	liver
13	chr5:90231600-90250800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr5:90233800-90234400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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