Variant report

Variant	rs73771164
Chromosome Location	chr5:90319142-90319143
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:90318711..90320728-chr5:90678692..90680631,2	K562	blood:
2	chr5:90318099..90320077-chr5:90338969..90341886,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000113369	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12109698	0.85[AFR][1000 genomes]
rs55908755	0.92[AFR][1000 genomes]
rs55914710	0.85[AFR][1000 genomes]
rs57830245	0.92[AFR][1000 genomes]
rs57931656	0.91[AFR][1000 genomes]
rs58577202	0.91[AFR][1000 genomes]
rs58617853	0.92[AFR][1000 genomes]
rs58790039	0.85[AFR][1000 genomes]
rs58911687	0.92[AFR][1000 genomes]
rs60272312	0.92[AFR][1000 genomes]
rs6888277	0.92[AFR][1000 genomes]
rs73771134	0.85[AFR][1000 genomes]
rs73771136	0.92[AFR][1000 genomes]
rs73771155	0.92[AFR][1000 genomes]
rs73771169	0.84[AFR][1000 genomes]
rs73771171	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529544	chr5:89523963-90412409	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv882369	chr5:90275825-90344149	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90309800-90323200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:90313400-90321600	Weak transcription	Liver	Liver
3	chr5:90313600-90321400	Weak transcription	Small Intestine	intestine
4	chr5:90313800-90320000	Weak transcription	Adipose Nuclei	Adipose
5	chr5:90314000-90319200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr5:90314200-90319800	Weak transcription	Fetal Stomach	stomach
7	chr5:90314200-90320800	Weak transcription	Fetal Intestine Large	intestine
8	chr5:90314800-90323200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr5:90314800-90327000	Weak transcription	Gastric	stomach
10	chr5:90315200-90319800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr5:90316600-90323200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr5:90317000-90323200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr5:90317000-90325000	Enhancers	Colon Smooth Muscle	Colon
14	chr5:90317400-90319200	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr5:90317600-90324600	Enhancers	Stomach Mucosa	stomach
16	chr5:90317800-90319400	Weak transcription	Psoas Muscle	Psoas
17	chr5:90317800-90323000	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr5:90318000-90321800	Enhancers	Rectal Smooth Muscle	rectum
19	chr5:90318200-90320400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr5:90318400-90319200	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr5:90318400-90319200	Enhancers	A549	lung
22	chr5:90318400-90319600	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr5:90318400-90324200	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr5:90318600-90319400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr5:90318600-90319400	Weak transcription	Fetal Lung	lung
26	chr5:90318600-90319400	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr5:90318600-90319800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr5:90318600-90320600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr5:90318600-90323800	Weak transcription	K562	blood
30	chr5:90318800-90319600	Enhancers	Rectal Mucosa Donor 29	rectum
31	chr5:90318800-90321000	Weak transcription	Duodenum Mucosa	Duodenum
32	chr5:90318800-90321600	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr5:90318800-90321800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr5:90318800-90323200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr5:90318800-90323200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr5:90319000-90319400	Weak transcription	Fetal Intestine Small	intestine
37	chr5:90319000-90320400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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