Variant report

Variant	rs73771177
Chromosome Location	chr5:90406145-90406146
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:90405182..90407708-chr5:90411248..90414003,2	MCF-7	breast:
2	chr5:90405497..90409184-chr5:90675252..90678679,4	K562	blood:

Variant related genes	Relation type
ENSG00000113369	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs56072107	1.00[AMR][1000 genomes]
rs56380505	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57330847	1.00[AMR][1000 genomes]
rs57931656	1.00[AMR][1000 genomes]
rs58577202	1.00[AMR][1000 genomes]
rs58675622	1.00[AMR][1000 genomes]
rs59760061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61195095	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73771169	1.00[AMR][1000 genomes]
rs73771171	1.00[AMR][1000 genomes]
rs73771174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73771178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73771179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529544	chr5:89523963-90412409	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
3	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90395400-90415200	Weak transcription	Left Ventricle	heart
2	chr5:90396200-90422800	Weak transcription	Esophagus	oesophagus
3	chr5:90398200-90406200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr5:90398200-90406400	Weak transcription	Brain Angular Gyrus	brain
5	chr5:90399400-90406200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr5:90401400-90406200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr5:90401600-90431800	Weak transcription	K562	blood
8	chr5:90402200-90407200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr5:90402400-90413600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:90403000-90415600	Weak transcription	Right Atrium	heart
11	chr5:90403000-90431600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr5:90403200-90406600	Weak transcription	Psoas Muscle	Psoas
13	chr5:90403200-90431600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr5:90403400-90418800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr5:90403400-90418800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr5:90405200-90407600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr5:90405200-90408200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr5:90405200-90408200	Enhancers	Brain Anterior Caudate	brain
19	chr5:90405200-90408200	Enhancers	NHDF-Ad	bronchial
20	chr5:90405400-90406800	Enhancers	Fetal Muscle Leg	muscle
21	chr5:90405400-90407000	Enhancers	Brain Hippocampus Middle	brain
22	chr5:90405400-90407800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr5:90405400-90408200	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr5:90405400-90409000	Enhancers	Fetal Brain Male	brain
25	chr5:90405600-90406400	Weak transcription	NHLF	lung
26	chr5:90405600-90406600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr5:90405800-90406800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr5:90405800-90410800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr5:90406000-90408000	Enhancers	Fetal Heart	heart

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