Variant report

Variant	rs73772340
Chromosome Location	chr6:130954400-130954401
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6917180	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9492702	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv427767	chr6:130875056-131008620	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv830806	chr6:130938330-131107137	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:130951600-130954600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:130952800-130954800	Enhancers	Fetal Muscle Leg	muscle
3	chr6:130953000-130955000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:130953000-130956000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:130953200-130954800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr6:130953400-130954400	Enhancers	Fetal Stomach	stomach
7	chr6:130953400-130954400	Enhancers	NHDF-Ad	bronchial
8	chr6:130953400-130954800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:130953400-130969000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:130953600-130954400	Enhancers	H9 Cell Line	embryonic stem cell
11	chr6:130953600-130954400	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr6:130953600-130954400	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr6:130953600-130954600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:130953600-130954800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:130953800-130954800	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr6:130953800-130954800	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr6:130954000-130954400	Enhancers	H1 Cell Line	embryonic stem cell
18	chr6:130954000-130954600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr6:130954000-130954600	Enhancers	HSMM	muscle
20	chr6:130954000-130955000	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr6:130954200-130954400	Flanking Active TSS	HSMMtube	muscle
22	chr6:130954200-130954600	Enhancers	Brain Anterior Caudate	brain
23	chr6:130954200-130955600	Enhancers	Pancreatic Islets	Pancreatic Islet
24	chr6:130954400-130954600	Enhancers	HSMMtube	muscle
25	chr6:130954400-130954800	Enhancers	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links