Variant report

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:90457529..90462053-chr5:90513611..90518131,5	MCF-7	breast:
2	chr5:90511811..90514758-chr5:90664819..90666474,2	K562	blood:
3	chr5:90513015..90523645-chr5:90674785..90682171,21	K562	blood:
4	chr5:90512455..90524285-chr5:90673793..90683360,52	MCF-7	breast:
5	chr5:90513386..90515491-chr5:90521883..90523828,2	K562	blood:
6	chr5:90510244..90526030-chr5:90672528..90682389,53	MCF-7	breast:
7	chr5:90512732..90524610-chr5:90674652..90682171,24	K562	blood:
8	chr20:52407579..52410186-chr5:90512301..90513847,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000251093	Chromatin interaction
ENSG00000113369	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10059932	0.89[EUR][1000 genomes]
rs10072875	0.81[EUR][1000 genomes]
rs10473941	0.89[EUR][1000 genomes]
rs10473942	0.89[EUR][1000 genomes]
rs10474344	0.81[EUR][1000 genomes]
rs10474345	0.81[EUR][1000 genomes]
rs13362365	0.86[EUR][1000 genomes]
rs28379688	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28490868	0.89[EUR][1000 genomes]
rs55657470	0.89[EUR][1000 genomes]
rs55818598	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55989779	0.89[EUR][1000 genomes]
rs56082303	0.86[EUR][1000 genomes]
rs56410910	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57891485	0.89[EUR][1000 genomes]
rs58520625	0.92[EUR][1000 genomes]
rs59967608	0.86[EUR][1000 genomes]
rs73773330	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73773334	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs73773337	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
3	nsv508369	chr5:90487017-90518540	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90508200-90513800	Enhancers	Placenta	Placenta
2	chr5:90508800-90514200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:90509000-90514200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:90509000-90514200	Weak transcription	Hela-S3	cervix
5	chr5:90509000-90514400	Weak transcription	Adipose Nuclei	Adipose
6	chr5:90509000-90514400	Weak transcription	K562	blood
7	chr5:90509200-90514200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:90509200-90514200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr5:90509200-90514200	Weak transcription	Osteobl	bone
10	chr5:90509200-90514400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr5:90509200-90514400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr5:90509200-90514400	Weak transcription	Fetal Intestine Large	intestine
13	chr5:90509400-90515000	Weak transcription	NHDF-Ad	bronchial
14	chr5:90510400-90514200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr5:90510600-90514200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr5:90512800-90514800	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr5:90513000-90514400	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr5:90513000-90514600	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr5:90513200-90514800	Enhancers	A549	lung

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