Variant report

Variant	rs73774358
Chromosome Location	chr5:96000463-96000464
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:95995785..95997823-chr5:95999172..96000986,2	K562	blood:
2	chr5:96000243..96001872-chr5:96034533..96037143,2	MCF-7	breast:
3	chr5:96000044..96002037-chr5:96005700..96007687,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000153113	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs55959916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56843965	0.80[AFR][1000 genomes]
rs57861617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58728530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59380160	0.80[AFR][1000 genomes]
rs73774353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73774354	0.86[AFR][1000 genomes]
rs73774355	0.80[AFR][1000 genomes]
rs73774357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73774359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73774360	0.86[AFR][1000 genomes]
rs73774361	0.86[AFR][1000 genomes]
rs73774362	0.86[AFR][1000 genomes]
rs73774364	0.86[AFR][1000 genomes]
rs73774367	0.84[AFR][1000 genomes]
rs73774369	0.84[AFR][1000 genomes]
rs73774375	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024964	chr5:95742124-96065492	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv537811	chr5:95742124-96065492	Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
3	nsv1015173	chr5:95987366-96153392	Genic enhancers Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
4	nsv432755	chr5:95987984-96657483	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95997200-96000800	Active TSS	Stomach Mucosa	stomach
2	chr5:95999400-96000600	Enhancers	HepG2	liver
3	chr5:95999400-96000800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr5:95999400-96001000	Flanking Active TSS	HMEC	breast
5	chr5:95999400-96001400	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr5:95999400-96001600	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr5:95999400-96002000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:95999400-96002600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:95999400-96002800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr5:95999400-96005000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr5:95999400-96018200	Weak transcription	Fetal Muscle Trunk	muscle
12	chr5:95999400-96038000	Weak transcription	Fetal Stomach	stomach
13	chr5:95999600-96000800	Enhancers	Primary T cells from cord blood	blood
14	chr5:95999600-96000800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr5:95999600-96000800	Enhancers	Liver	Liver
16	chr5:95999600-96000800	Enhancers	HUVEC	blood vessel
17	chr5:95999600-96000800	Enhancers	Osteobl	bone
18	chr5:95999600-96001000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr5:95999600-96001200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr5:95999600-96001400	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr5:95999600-96001400	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr5:95999600-96001400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr5:95999600-96001800	Weak transcription	Small Intestine	intestine
24	chr5:95999600-96001800	Weak transcription	Stomach Smooth Muscle	stomach
25	chr5:95999600-96002000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr5:95999600-96002000	Weak transcription	Colonic Mucosa	Colon
27	chr5:95999600-96002000	Weak transcription	Psoas Muscle	Psoas
28	chr5:95999600-96002200	Weak transcription	Esophagus	oesophagus
29	chr5:95999600-96003800	Weak transcription	Fetal Kidney	kidney
30	chr5:95999600-96003800	Weak transcription	Gastric	stomach
31	chr5:95999600-96004400	Weak transcription	Right Atrium	heart
32	chr5:95999600-96004600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr5:95999600-96004600	Weak transcription	Lung	lung
34	chr5:95999600-96004600	Weak transcription	Ovary	ovary
35	chr5:95999600-96006800	Weak transcription	Right Ventricle	heart
36	chr5:95999600-96006800	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr5:95999600-96006800	Weak transcription	Spleen	Spleen
38	chr5:95999600-96012400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr5:95999600-96016600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr5:95999600-96016600	Weak transcription	HSMMtube	muscle
41	chr5:95999600-96026000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr5:95999600-96028200	Weak transcription	Aorta	Aorta
43	chr5:95999600-96037800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr5:95999600-96038000	Weak transcription	Fetal Lung	lung
45	chr5:95999800-96000600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr5:95999800-96000600	Enhancers	Rectal Smooth Muscle	rectum
47	chr5:95999800-96000800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr5:95999800-96000800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr5:95999800-96000800	Enhancers	Hela-S3	cervix
50	chr5:95999800-96000800	Weak transcription	HSMM	muscle

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