Variant report

Variant	rs73774615
Chromosome Location	chr5:101613863-101613864
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs56066413	1.00[AFR][1000 genomes]
rs56152409	0.91[AFR][1000 genomes]
rs57514576	1.00[AFR][1000 genomes]
rs58213082	1.00[AFR][1000 genomes]
rs59921651	1.00[AFR][1000 genomes]
rs61020641	1.00[AFR][1000 genomes]
rs61309650	1.00[AFR][1000 genomes]
rs61460142	1.00[AFR][1000 genomes]
rs73774603	1.00[AFR][1000 genomes]
rs73774604	0.91[AFR][1000 genomes]
rs73774608	1.00[AFR][1000 genomes]
rs73774611	1.00[AFR][1000 genomes]
rs73774612	1.00[AFR][1000 genomes]
rs73774614	1.00[AFR][1000 genomes]
rs73774617	0.98[AFR][1000 genomes]
rs73774618	1.00[AFR][1000 genomes]
rs73774619	1.00[AFR][1000 genomes]
rs73774620	1.00[AFR][1000 genomes]
rs73778234	1.00[AFR][1000 genomes]
rs73778236	1.00[AFR][1000 genomes]
rs73778237	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022551	chr5:101366177-101649643	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv882505	chr5:101397849-101652251	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1028787	chr5:101432086-101718569	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv817537	chr5:101489151-101992104	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1016176	chr5:101534391-102333606	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv537831	chr5:101534391-102333606	Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
7	nsv522882	chr5:101596633-101782930	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	esv3385694	chr5:101599102-101620704	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:101606400-101624400	Weak transcription	Liver	Liver
2	chr5:101608000-101614200	Weak transcription	Fetal Intestine Small	intestine
3	chr5:101611600-101615600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr5:101612200-101616000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr5:101612800-101614400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr5:101613000-101614000	Enhancers	Primary T cells from cord blood	blood
7	chr5:101613000-101614400	Enhancers	Primary hematopoietic stem cells	blood
8	chr5:101613000-101614400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr5:101613200-101614200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr5:101613200-101614400	Weak transcription	Primary B cells from cord blood	blood
11	chr5:101613400-101624400	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr5:101613400-101629400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr5:101613800-101614400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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