Variant report

Variant	rs73774846
Chromosome Location	chr5:102027530-102027531
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:102025482..102028376-chr5:102028743..102031043,3	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11958430	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17152753	1.00[EUR][1000 genomes]
rs17153568	1.00[EUR][1000 genomes]
rs17153781	1.00[EUR][1000 genomes]
rs17154026	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58716855	1.00[AMR][1000 genomes]
rs59290324	1.00[AMR][1000 genomes]
rs60180431	1.00[AMR][1000 genomes]
rs6596510	1.00[EUR][1000 genomes]
rs6596511	1.00[EUR][1000 genomes]
rs6596512	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6596513	1.00[EUR][1000 genomes]
rs6869156	1.00[AMR][1000 genomes]
rs6869874	1.00[EUR][1000 genomes]
rs6870753	1.00[AMR][1000 genomes]
rs6872779	1.00[AMR][1000 genomes]
rs6884867	1.00[EUR][1000 genomes]
rs6890942	1.00[AMR][1000 genomes]
rs73774847	1.00[EUR][1000 genomes]
rs7703621	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7707787	1.00[AMR][1000 genomes]
rs7716303	1.00[AMR][1000 genomes]
rs7721591	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7723320	1.00[EUR][1000 genomes]
rs7724728	1.00[AMR][1000 genomes]
rs7727074	1.00[EUR][1000 genomes]
rs7729678	1.00[AMR][1000 genomes]
rs7736392	1.00[EUR][1000 genomes]
rs9686868	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016176	chr5:101534391-102333606	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv537831	chr5:101534391-102333606	Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1029894	chr5:101620079-102516827	Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
4	nsv1033193	chr5:101859229-102420837	Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv427728	chr5:101937704-102103247	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv882518	chr5:102005787-102107262	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:102026800-102027800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr5:102027200-102027800	Enhancers	Colon Smooth Muscle	Colon

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