Variant report

Variant	rs73775444
Chromosome Location	chr6:140289143-140289144
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs55740413	0.86[AFR][1000 genomes]
rs56837781	0.86[AFR][1000 genomes]
rs57193556	0.85[AFR][1000 genomes]
rs73775476	0.86[AFR][1000 genomes]
rs73775477	0.86[AFR][1000 genomes]
rs73775481	0.81[AFR][1000 genomes]
rs73775482	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1017015	chr6:140084137-140300565	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1019407	chr6:140087307-140304334	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140284400-140292200	Weak transcription	Placenta	Placenta
2	chr6:140286000-140289200	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr6:140286400-140290000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr6:140286800-140291400	Weak transcription	NH-A	brain
5	chr6:140287000-140292600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:140287800-140289200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:140287800-140299000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:140288200-140289200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:140288200-140289200	Enhancers	Osteobl	bone
10	chr6:140288400-140289400	Enhancers	HUVEC	blood vessel
11	chr6:140288800-140289200	Enhancers	NHDF-Ad	bronchial
12	chr6:140288800-140289600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:140289000-140289200	Enhancers	HSMM	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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