Variant report

Variant	rs73775637
Chromosome Location	chr5:100144043-100144044
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs60651360	1.00[AFR][1000 genomes]
rs73775626	1.00[AFR][1000 genomes]
rs73775635	1.00[AFR][1000 genomes]
rs73775640	1.00[AFR][1000 genomes]
rs73777439	1.00[AFR][1000 genomes]
rs73777442	1.00[AFR][1000 genomes]
rs73777446	1.00[AFR][1000 genomes]
rs73777476	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021183	chr5:99625857-100221426	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1023765	chr5:99915011-100733755	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	esv1834675	chr5:100143084-100535029	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:100139000-100146400	Weak transcription	Primary B cells from cord blood	blood
2	chr5:100139400-100154400	Weak transcription	Fetal Lung	lung
3	chr5:100139400-100155400	Weak transcription	Placenta	Placenta
4	chr5:100139600-100144400	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr5:100139600-100149200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr5:100140200-100147000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:100140800-100147200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr5:100141800-100147000	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr5:100142200-100147000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr5:100142400-100144200	ZNF genes & repeats	GM12878-XiMat	blood
11	chr5:100142400-100146400	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr5:100142400-100150000	Strong transcription	Dnd41	blood
13	chr5:100142400-100154000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr5:100142600-100147000	Weak transcription	Primary T cells from cord blood	blood
15	chr5:100142600-100150000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr5:100142800-100144400	Weak transcription	Fetal Thymus	thymus
17	chr5:100143000-100146400	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr5:100143000-100146600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr5:100143000-100146800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr5:100143000-100147000	Weak transcription	Primary hematopoietic stem cells	blood
21	chr5:100143000-100150000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr5:100143200-100146400	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr5:100143400-100144800	Strong transcription	Primary B cells from peripheral blood	blood
24	chr5:100143400-100146800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr5:100143400-100163200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr5:100143800-100145600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr5:100143800-100147000	Strong transcription	Monocytes-CD14+_RO01746	blood

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