Variant report

Variant	rs73776883
Chromosome Location	chr6:141480630-141480631
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:141474693..141476532-chr6:141479215..141481575,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs17070713	1.00[AMR][1000 genomes]
rs17070754	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56409708	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56803687	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58467617	1.00[AMR][1000 genomes]
rs58860114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60676284	1.00[AMR][1000 genomes]
rs73776817	1.00[AMR][1000 genomes]
rs73776877	1.00[AMR][1000 genomes]
rs73776888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73776889	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73776893	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73776896	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73776902	1.00[AMR][1000 genomes]
rs73778705	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778715	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778716	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778717	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778719	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778720	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778722	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778724	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778726	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778732	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778736	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778744	1.00[AMR][1000 genomes]
rs73778751	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019459	chr6:141051249-141862727	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538453	chr6:141051249-141862727	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv532070	chr6:141057326-141865359	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1025922	chr6:141090901-141865360	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv538454	chr6:141090901-141865360	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1028540	chr6:141121435-141740831	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv604780	chr6:141126080-141740918	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1033387	chr6:141130072-141742682	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv1030686	chr6:141130072-141749079	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1024981	chr6:141134064-141742682	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv916684	chr6:141149976-141682411	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv532071	chr6:141150099-141682503	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv1035133	chr6:141156919-141650334	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv1029033	chr6:141156919-141740831	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	nsv886720	chr6:141328865-141725335	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	nsv886721	chr6:141328865-141739208	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	nsv1029550	chr6:141372610-142029669	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
18	nsv830822	chr6:141387803-141542998	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv886725	chr6:141428255-141718812	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv886726	chr6:141428255-141764919	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:141473600-141485200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:141473600-141485200	Weak transcription	Left Ventricle	heart
3	chr6:141475200-141493800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:141476800-141485600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:141477000-141486000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr6:141479400-141481200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:141480400-141481400	Enhancers	Fetal Heart	heart
8	chr6:141480400-141490600	Weak transcription	HSMMtube	muscle
9	chr6:141480600-141482000	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr6:141480600-141483600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr6:141480600-141486000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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