Variant report

Variant	rs73777405
Chromosome Location	chr6:140416088-140416089
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73777412	0.93[AFR][1000 genomes]
rs73777417	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1019508	chr6:140317472-140434466	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1022987	chr6:140344229-140463916	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140415600-140416600	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr6:140415600-140416600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:140415600-140418400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr6:140415600-140418600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr6:140415800-140416200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:140415800-140416200	Enhancers	H9 Cell Line	embryonic stem cell
7	chr6:140415800-140416200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr6:140415800-140417200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:140415800-140417600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:140415800-140417600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr6:140415800-140417800	Enhancers	H1 Cell Line	embryonic stem cell
12	chr6:140415800-140417800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:140415800-140418000	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr6:140415800-140418600	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr6:140415800-140419000	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr6:140416000-140416200	Enhancers	Aorta	Aorta
17	chr6:140416000-140417000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr6:140416000-140417400	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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