Variant report

Variant	rs73778074
Chromosome Location	chr6:140209999-140210000
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:140209627..140212034-chr6:140215859..140218280,2	K562	blood:
2	chr6:140202515..140205528-chr6:140208165..140211710,3	K562	blood:
3	chr6:140202746..140205528-chr6:140208165..140210292,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs57193556	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv830820	chr6:140059279-140255292	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv1017015	chr6:140084137-140300565	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1019407	chr6:140087307-140304334	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140202400-140211800	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr6:140203400-140212600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:140203600-140211000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:140204600-140210000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:140204600-140213200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:140204800-140210200	Weak transcription	K562	blood
7	chr6:140205000-140210000	Weak transcription	Brain Anterior Caudate	brain
8	chr6:140205200-140210000	Weak transcription	Brain Hippocampus Middle	brain
9	chr6:140206800-140210000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr6:140206800-140210800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:140207200-140211400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:140208200-140210000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr6:140208200-140211000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:140208400-140211000	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr6:140208600-140210400	Enhancers	H1 Cell Line	embryonic stem cell
16	chr6:140209000-140210400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr6:140209000-140211000	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr6:140209000-140211000	Enhancers	Fetal Heart	heart
19	chr6:140209000-140212400	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr6:140209200-140210200	Enhancers	Fetal Brain Male	brain
21	chr6:140209200-140210400	Enhancers	Fetal Brain Female	brain
22	chr6:140209200-140210800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr6:140209400-140210000	Weak transcription	Fetal Intestine Small	intestine
24	chr6:140209400-140210200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr6:140209400-140210200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr6:140209400-140210400	Enhancers	Fetal Lung	lung
27	chr6:140209600-140210000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr6:140209600-140210200	Enhancers	NHLF	lung
29	chr6:140209600-140210400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
30	chr6:140209600-140210400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr6:140209600-140210400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
32	chr6:140209600-140210600	Enhancers	HSMM	muscle
33	chr6:140209800-140210000	Enhancers	HUES48 Cell Line	embryonic stem cell
34	chr6:140209800-140210200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr6:140209800-140210200	Enhancers	Muscle Satellite Cultured Cells	--
36	chr6:140209800-140210200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr6:140209800-140210200	Enhancers	Brain Substantia Nigra	brain
38	chr6:140209800-140210200	Enhancers	Fetal Stomach	stomach
39	chr6:140209800-140210200	Enhancers	Left Ventricle	heart
40	chr6:140209800-140210200	Enhancers	HSMMtube	muscle
41	chr6:140209800-140210400	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr6:140209800-140210400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr6:140209800-140210400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr6:140209800-140210400	Enhancers	Fetal Kidney	kidney
45	chr6:140209800-140210400	Enhancers	Fetal Muscle Leg	muscle
46	chr6:140209800-140210400	Enhancers	Placenta	Placenta
47	chr6:140209800-140210400	Enhancers	Ovary	ovary
48	chr6:140209800-140210400	Enhancers	Placenta Amnion	Placenta Amnion
49	chr6:140209800-140210400	Enhancers	Rectal Smooth Muscle	rectum
50	chr6:140209800-140210400	Enhancers	Stomach Smooth Muscle	stomach

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