Variant report

Variant	rs73778377
Chromosome Location	chr5:108319139-108319140
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs73778370	1.00[AMR][1000 genomes]
rs73778372	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778374	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778375	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73778376	1.00[AMR][1000 genomes]
rs73778378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016343	chr5:108220116-108364687	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv882691	chr5:108229760-108366473	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108203800-108323400	Weak transcription	Primary B cells from cord blood	blood
2	chr5:108217600-108323200	Weak transcription	Left Ventricle	heart
3	chr5:108277600-108322400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr5:108279200-108325600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:108282200-108324600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr5:108282400-108327200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr5:108290000-108322000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr5:108290000-108328800	Weak transcription	Esophagus	oesophagus
9	chr5:108293400-108325600	Weak transcription	NHEK	skin
10	chr5:108294400-108329400	Weak transcription	Brain Hippocampus Middle	brain
11	chr5:108295200-108319400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr5:108299600-108328800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr5:108301400-108328600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr5:108301600-108361200	Weak transcription	Primary T cells from cord blood	blood
15	chr5:108302200-108330200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr5:108303000-108319400	Weak transcription	HSMM	muscle
17	chr5:108303000-108329000	Weak transcription	Gastric	stomach
18	chr5:108303200-108321200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr5:108303200-108322200	Weak transcription	Pancreas	Pancrea
20	chr5:108303200-108322400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr5:108303200-108331800	Weak transcription	Ovary	ovary
22	chr5:108303800-108321000	Weak transcription	Fetal Lung	lung
23	chr5:108303800-108322000	Weak transcription	Primary hematopoietic stem cells	blood
24	chr5:108303800-108322200	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr5:108304000-108328800	Weak transcription	Fetal Intestine Small	intestine
26	chr5:108308400-108328800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr5:108308400-108336000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr5:108309800-108333600	Weak transcription	Fetal Muscle Trunk	muscle
29	chr5:108310000-108323400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr5:108310200-108322400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr5:108310200-108322400	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr5:108310400-108322400	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr5:108311600-108321200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr5:108313200-108322400	Weak transcription	Psoas Muscle	Psoas
35	chr5:108313800-108321200	Weak transcription	Lung	lung
36	chr5:108314200-108329400	Weak transcription	Adipose Nuclei	Adipose
37	chr5:108316000-108319200	Weak transcription	Osteobl	bone
38	chr5:108316800-108321200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr5:108317600-108322400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr5:108317800-108329200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr5:108318600-108319800	Enhancers	NHDF-Ad	bronchial
42	chr5:108318800-108319200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr5:108318800-108319600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr5:108319000-108319600	Enhancers	Muscle Satellite Cultured Cells	--
45	chr5:108319000-108325600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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