Variant report

Variant	rs73778604
Chromosome Location	chr6:143920505-143920506
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143913189..143915337-chr6:143920138..143922822,2	MCF-7	breast:
2	chr6:143919523..143922006-chr6:143930988..143932681,2	K562	blood:
3	chr6:143917132..143921023-chr6:143928488..143932681,3	K562	blood:

Variant related genes	Relation type
ENSG00000112419	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs59682731	0.90[AFR][1000 genomes]
rs60907469	0.97[AFR][1000 genomes]
rs73780456	0.90[AFR][1000 genomes]
rs73780460	0.90[AFR][1000 genomes]
rs73780461	0.90[AFR][1000 genomes]
rs9484780	0.88[AFR][1000 genomes]
rs9496695	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758084	chr6:143916621-144079976	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759476	chr6:143916621-144079976	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143911200-143929200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:143913200-143928400	Weak transcription	Aorta	Aorta
3	chr6:143917000-143973600	Weak transcription	Fetal Intestine Small	intestine
4	chr6:143917200-143929000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr6:143917200-143941400	Weak transcription	Fetal Intestine Large	intestine
6	chr6:143918200-143920600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr6:143918200-143929200	Weak transcription	Lung	lung
8	chr6:143918400-143921200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:143918400-143921200	Weak transcription	Left Ventricle	heart
10	chr6:143918400-143922800	Weak transcription	Fetal Muscle Leg	muscle
11	chr6:143919200-143923400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:143919600-143922600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:143919800-143930400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr6:143919800-143930600	Weak transcription	Stomach Mucosa	stomach
15	chr6:143920000-143921000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr6:143920000-143923200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:143920000-143935200	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr6:143920200-143922800	Weak transcription	Placenta	Placenta
19	chr6:143920200-143923200	Weak transcription	Adipose Nuclei	Adipose
20	chr6:143920200-143935000	Weak transcription	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links