Variant report

Variant	rs73778796
Chromosome Location	chr6:141873551-141873552
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs58792604	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs59904896	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs6570466	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs6570467	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7750562	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs7771221	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs9496064	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029550	chr6:141372610-142029669	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1015835	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv538455	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv2755719	chr6:141721907-142123546	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv3357551	chr6:141871234-141878633	Enhancers Strong transcription ZNF genes & repeats Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:141873000-141874000	Enhancers	HepG2	liver
2	chr6:141873000-141875000	Enhancers	Hela-S3	cervix
3	chr6:141873200-141875200	Enhancers	HUVEC	blood vessel
4	chr6:141873400-141873800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:141873400-141873800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:141873400-141873800	Enhancers	A549	lung
7	chr6:141873400-141874400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr6:141873400-141874400	Enhancers	HMEC	breast
9	chr6:141873400-141874400	Enhancers	NH-A	brain
10	chr6:141873400-141874400	Enhancers	NHEK	skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links