Variant report

Variant	rs73779130
Chromosome Location	chr5:108437833-108437834
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:108432296..108433865-chr5:108435051..108437891,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10040959	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10043540	0.91[ASN][1000 genomes]
rs10056058	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10063845	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10070411	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10073414	0.97[AFR][1000 genomes]
rs10085093	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10477944	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10477945	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10477946	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10477947	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10477948	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10477949	0.90[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10477952	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs17450387	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17473391	0.84[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs17534626	0.89[AFR][1000 genomes]
rs2195944	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2217649	0.86[EUR][1000 genomes]
rs2416198	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2416200	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28699553	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4957567	0.86[EUR][1000 genomes]
rs4957798	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55930293	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55953478	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs56227556	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57196331	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs59337218	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6872780	0.85[EUR][1000 genomes]
rs73779027	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs73779047	0.87[AFR][1000 genomes]
rs73779135	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9326759	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9326760	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9326762	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830443	chr5:108326491-108496723	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv882692	chr5:108391660-108474166	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv882693	chr5:108391660-108502493	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv882694	chr5:108391660-108524416	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108410400-108441200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:108416400-108441200	Weak transcription	HSMM	muscle
3	chr5:108422800-108444800	Weak transcription	Left Ventricle	heart
4	chr5:108426000-108441400	Weak transcription	Aorta	Aorta
5	chr5:108427400-108441200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:108427400-108441400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr5:108433400-108441400	Weak transcription	Fetal Heart	heart
8	chr5:108435600-108446800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr5:108436400-108441400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:108437000-108441200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr5:108437000-108441400	Weak transcription	Colon Smooth Muscle	Colon
12	chr5:108437000-108441400	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr5:108437600-108438200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr5:108437800-108438200	Enhancers	Muscle Satellite Cultured Cells	--
15	chr5:108437800-108438400	Enhancers	NHDF-Ad	bronchial

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