Variant report

Variant	rs73779546
Chromosome Location	chr6:150020703-150020704
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150019259..150021949-chr6:150070878..150073738,2	K562	blood:
2	chr6:150018373..150021120-chr6:150036550..150038788,2	K562	blood:
3	chr6:150004563..150007128-chr6:150016460..150020712,4	MCF-7	breast:
4	chr6:150019285..150022241-chr6:150037618..150040605,2	MCF-7	breast:
5	chr6:150019221..150021873-chr6:150025151..150027737,4	K562	blood:
6	chr6:150017835..150020860-chr6:150036503..150040749,6	K562	blood:

Variant related genes	Relation type
ENSG00000120265	Chromatin interaction
ENSG00000131023	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs55810699	0.87[AFR][1000 genomes]
rs55858131	1.00[AFR][1000 genomes]
rs56077604	0.94[AFR][1000 genomes]
rs56170330	0.82[AFR][1000 genomes]
rs59865840	1.00[AFR][1000 genomes]
rs73779380	0.82[AFR][1000 genomes]
rs73779536	0.94[AFR][1000 genomes]
rs73779539	0.81[AFR][1000 genomes]
rs73779541	0.81[AFR][1000 genomes]
rs73779544	0.87[AFR][1000 genomes]
rs73779552	0.81[AFR][1000 genomes]
rs73781236	0.82[AFR][1000 genomes]
rs73781245	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv1792620	chr6:149909491-150083621	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	esv3475167	chr6:150003006-150086225	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	esv3475168	chr6:150003006-150086225	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	esv1803291	chr6:150018508-150164190	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149977200-150022600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:149978000-150029200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:149980600-150024800	Strong transcription	Fetal Thymus	thymus
4	chr6:149987000-150036800	Weak transcription	Hela-S3	cervix
5	chr6:149997800-150027400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr6:149998000-150020800	Weak transcription	Small Intestine	intestine
7	chr6:149998000-150029800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:150000000-150022000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:150005400-150021000	Weak transcription	Stomach Mucosa	stomach
10	chr6:150005400-150029800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr6:150005600-150023000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr6:150005600-150029600	Weak transcription	Aorta	Aorta
13	chr6:150005600-150030200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr6:150005600-150030200	Weak transcription	Fetal Heart	heart
15	chr6:150005600-150030400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr6:150005600-150030400	Weak transcription	HSMMtube	muscle
17	chr6:150005600-150037400	Weak transcription	Esophagus	oesophagus
18	chr6:150005600-150037800	Weak transcription	Gastric	stomach
19	chr6:150005800-150020800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr6:150005800-150027400	Weak transcription	Spleen	Spleen
21	chr6:150007400-150023200	Strong transcription	Fetal Muscle Trunk	muscle
22	chr6:150007800-150022200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr6:150007800-150027400	Weak transcription	Right Ventricle	heart
24	chr6:150007800-150036800	Weak transcription	Brain Germinal Matrix	brain
25	chr6:150008000-150024000	Weak transcription	Psoas Muscle	Psoas
26	chr6:150008200-150022800	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr6:150008200-150030000	Weak transcription	Brain Hippocampus Middle	brain
28	chr6:150009000-150024400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr6:150009400-150023200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr6:150009400-150023400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr6:150009400-150024800	Strong transcription	Dnd41	blood
32	chr6:150009600-150023200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr6:150009600-150025200	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr6:150009800-150024800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr6:150011400-150023200	Strong transcription	Placenta	Placenta
36	chr6:150013600-150023000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr6:150013600-150037200	Weak transcription	Colonic Mucosa	Colon
38	chr6:150013800-150022800	Weak transcription	Fetal Kidney	kidney
39	chr6:150015000-150022800	Weak transcription	Brain Anterior Caudate	brain
40	chr6:150015000-150023000	Weak transcription	Fetal Lung	lung
41	chr6:150015200-150029800	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr6:150015200-150037400	Weak transcription	Lung	lung
43	chr6:150015400-150027800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr6:150015600-150020800	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr6:150015600-150021200	Weak transcription	Left Ventricle	heart
46	chr6:150015600-150029800	Weak transcription	Fetal Intestine Large	intestine
47	chr6:150015600-150030000	Weak transcription	Fetal Brain Female	brain
48	chr6:150015600-150036400	Weak transcription	Pancreas	Pancrea
49	chr6:150016000-150026600	Weak transcription	HUVEC	blood vessel
50	chr6:150016200-150029800	Weak transcription	Placenta Amnion	Placenta Amnion

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