Variant report

Variant	rs73779930
Chromosome Location	chr6:150591542-150591543
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150585699..150588298-chr6:150589513..150591706,2	K562	blood:
2	chr6:150588773..150591393-chr6:150591530..150593093,2	MCF-7	breast:
3	chr6:150590870..150594725-chr6:150600682..150606277,5	K562	blood:
4	chr6:150549697..150551669-chr6:150591233..150592989,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs58085182	0.83[AFR][1000 genomes]
rs73779909	0.83[AFR][1000 genomes]
rs73779917	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv2763602	chr6:150581193-150720666	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150583600-150606800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:150587000-150595200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:150587200-150593400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:150587200-150599200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:150587400-150593600	Enhancers	HMEC	breast
6	chr6:150587600-150599200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr6:150588000-150591600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:150588000-150592000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:150589200-150593400	Weak transcription	Psoas Muscle	Psoas
10	chr6:150589400-150591800	Enhancers	Muscle Satellite Cultured Cells	--
11	chr6:150589400-150594000	Enhancers	NH-A	brain
12	chr6:150589600-150594600	Weak transcription	Fetal Muscle Trunk	muscle
13	chr6:150589800-150593400	Enhancers	NHEK	skin
14	chr6:150590000-150593200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:150590000-150593800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr6:150590200-150593200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:150590400-150591600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:150590600-150591600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:150590600-150591600	Enhancers	Placenta Amnion	Placenta Amnion
20	chr6:150590600-150592000	Enhancers	HepG2	liver
21	chr6:150590800-150592000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:150590800-150594800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr6:150590800-150597000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:150591000-150591600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr6:150591000-150591600	Enhancers	Pancreas	Pancrea
26	chr6:150591200-150592800	Weak transcription	Placenta	Placenta
27	chr6:150591200-150593200	Weak transcription	Esophagus	oesophagus
28	chr6:150591400-150592000	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr6:150591400-150594000	Flanking Active TSS	K562	blood

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