Variant report

Variant	rs73780151
Chromosome Location	chr5:95039881-95039882
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11951489	1.00[EUR][1000 genomes]
rs17084945	1.00[EUR][1000 genomes]
rs17084958	1.00[EUR][1000 genomes]
rs17084960	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60566082	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60694924	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73780147	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73780245	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598955	chr5:94903453-95136019	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830409	chr5:95006686-95204496	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95015000-95040400	Weak transcription	HSMMtube	muscle
2	chr5:95031400-95046000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr5:95033200-95047000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:95033400-95044400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr5:95034000-95045800	Weak transcription	Ovary	ovary
6	chr5:95034200-95045800	Weak transcription	Fetal Kidney	kidney
7	chr5:95034400-95043000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr5:95035200-95041800	Weak transcription	K562	blood
9	chr5:95036400-95040400	Weak transcription	Placenta	Placenta
10	chr5:95037800-95045800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr5:95039600-95040000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr5:95039600-95040000	Enhancers	Brain Cingulate Gyrus	brain
13	chr5:95039600-95040600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr5:95039800-95040200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr5:95039800-95048000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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