Variant report

Variant	rs73780162
Chromosome Location	chr6:143096107-143096108
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs61180146	1.00[AMR][1000 genomes]
rs73780160	1.00[AMR][1000 genomes]
rs73780161	1.00[AMR][1000 genomes]
rs7738632	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830828	chr6:142970134-143116517	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv830829	chr6:143058408-143218077	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	esv3402921	chr6:143090059-143097157	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143078200-143096200	Strong transcription	Primary hematopoietic stem cells	blood
2	chr6:143081800-143097000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:143081800-143105600	Weak transcription	Small Intestine	intestine
4	chr6:143082000-143096200	Weak transcription	A549	lung
5	chr6:143082200-143097000	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr6:143083400-143097400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr6:143084200-143096200	Strong transcription	Primary B cells from peripheral blood	blood
8	chr6:143085200-143096400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:143085600-143096200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:143086800-143096200	Strong transcription	GM12878-XiMat	blood
11	chr6:143087000-143097400	Weak transcription	Fetal Heart	heart
12	chr6:143087600-143096200	Strong transcription	HSMM	muscle
13	chr6:143087800-143096200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr6:143088200-143096200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:143088200-143096200	Strong transcription	Adipose Nuclei	Adipose
16	chr6:143088600-143096200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:143088800-143096200	Strong transcription	Thymus	Thymus
18	chr6:143089200-143096200	Strong transcription	Osteobl	bone
19	chr6:143090000-143096200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:143090000-143096200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:143090000-143096200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr6:143090000-143096200	Strong transcription	Fetal Muscle Leg	muscle
23	chr6:143090400-143096200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr6:143090600-143096200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr6:143090600-143096200	Strong transcription	Fetal Muscle Trunk	muscle
26	chr6:143090600-143096200	Strong transcription	Left Ventricle	heart
27	chr6:143090600-143096200	Strong transcription	NH-A	brain
28	chr6:143090800-143096200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr6:143090800-143096200	Strong transcription	Duodenum Smooth Muscle	Duodenum
30	chr6:143090800-143096200	Strong transcription	Pancreas	Pancrea
31	chr6:143091200-143099600	Weak transcription	Right Atrium	heart
32	chr6:143091400-143096200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr6:143091400-143102800	Weak transcription	Colon Smooth Muscle	Colon
34	chr6:143092200-143097600	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr6:143092800-143102600	Weak transcription	Psoas Muscle	Psoas
36	chr6:143093000-143096200	Strong transcription	HUES64 Cell Line	embryonic stem cell
37	chr6:143093000-143101400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr6:143094000-143096200	Genic enhancers	Primary T cells fromperipheralblood	blood
39	chr6:143094000-143096200	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
40	chr6:143094200-143096200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
41	chr6:143094200-143104600	Weak transcription	Brain Angular Gyrus	brain
42	chr6:143094400-143096200	Strong transcription	HUES48 Cell Line	embryonic stem cell
43	chr6:143094400-143096200	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
44	chr6:143094600-143096200	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
45	chr6:143094600-143096200	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
46	chr6:143094800-143109000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr6:143095000-143096200	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
48	chr6:143095200-143096200	Genic enhancers	Primary T cells from cord blood	blood
49	chr6:143095400-143096200	Genic enhancers	Dnd41	blood
50	chr6:143095400-143101200	Weak transcription	Fetal Brain Male	brain

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