Variant report

Variant	rs73780609
Chromosome Location	chr5:115071557-115071558
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73782755	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916273	chr5:114656592-115089901	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv868915	chr5:114723371-115252527	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv1024641	chr5:115030110-115123474	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1021139	chr5:115036724-115131280	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv823184	chr5:115071293-115071735	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115060600-115081000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:115068800-115072200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr5:115069000-115071600	Enhancers	Adipose Nuclei	Adipose
4	chr5:115069200-115072200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr5:115069200-115074400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr5:115070000-115071600	Enhancers	H9 Cell Line	embryonic stem cell
7	chr5:115070200-115071600	Enhancers	Primary B cells from peripheral blood	blood
8	chr5:115070200-115073400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr5:115070400-115071600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr5:115070600-115071600	Flanking Active TSS	Liver	Liver
11	chr5:115070600-115074600	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr5:115070800-115071800	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr5:115070800-115071800	Enhancers	Aorta	Aorta
14	chr5:115070800-115073400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr5:115071000-115071600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:115071000-115071600	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr5:115071000-115071600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr5:115071000-115071600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr5:115071000-115071800	Enhancers	Primary B cells from cord blood	blood
20	chr5:115071000-115073800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr5:115071000-115073800	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr5:115071000-115074200	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr5:115071000-115074600	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr5:115071200-115071600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr5:115071200-115071600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr5:115071200-115071600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr5:115071200-115071600	Enhancers	Brain Substantia Nigra	brain
28	chr5:115071200-115071600	Enhancers	Ovary	ovary
29	chr5:115071400-115071600	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr5:115071400-115073600	Weak transcription	HepG2	liver

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