Variant report

Variant	rs73780644
Chromosome Location	chr5:115947521-115947522
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17140496	1.00[EUR][1000 genomes]
rs2220747	1.00[EUR][1000 genomes]
rs55653827	1.00[EUR][1000 genomes]
rs55728603	1.00[EUR][1000 genomes]
rs73780639	1.00[AMR][1000 genomes]
rs7715878	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763490	chr5:115918339-116138525	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115939800-115949200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr5:115941000-115949200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr5:115941800-115949600	Weak transcription	Fetal Stomach	stomach
4	chr5:115942400-115964200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr5:115943200-115957200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:115944000-115947800	Weak transcription	Fetal Intestine Small	intestine
7	chr5:115946400-115950800	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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