Variant report

Variant	rs73781156
Chromosome Location	chr5:107001372-107001373
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107000146..107001878-chr5:107002234..107005030,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs61293072	1.00[AMR][1000 genomes]
rs73781152	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv1797335	chr5:106981612-107004761	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106989200-107003000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:106989400-107004000	Weak transcription	Fetal Stomach	stomach
3	chr5:106989600-107002000	Weak transcription	Fetal Lung	lung
4	chr5:106992000-107001600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr5:106992000-107002000	Weak transcription	HMEC	breast
6	chr5:106992200-107002000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:106997200-107004200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr5:106997400-107004200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:106997400-107004600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr5:106998000-107003800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr5:106999400-107001800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr5:106999600-107001400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr5:106999800-107001400	Enhancers	HUVEC	blood vessel
14	chr5:107000000-107006800	Active TSS	GM12878-XiMat	blood
15	chr5:107000200-107001400	Enhancers	NHDF-Ad	bronchial
16	chr5:107000400-107003800	Enhancers	Fetal Heart	heart
17	chr5:107000800-107001400	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr5:107000800-107001400	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr5:107000800-107001400	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr5:107000800-107001400	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr5:107000800-107002200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr5:107001000-107001400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr5:107001000-107001400	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr5:107001000-107001600	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr5:107001000-107002000	Weak transcription	Adipose Nuclei	Adipose
26	chr5:107001000-107002000	Enhancers	Pancreatic Islets	Pancreatic Islet
27	chr5:107001000-107002000	Weak transcription	NHEK	skin
28	chr5:107001000-107004000	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr5:107001200-107001400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr5:107001200-107001600	Enhancers	A549	lung
31	chr5:107001200-107001800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr5:107001200-107001800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr5:107001200-107003600	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr5:107001200-107004000	Weak transcription	Left Ventricle	heart
35	chr5:107001200-107004000	Weak transcription	Placenta Amnion	Placenta Amnion

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