Variant report

Variant	rs73781706
Chromosome Location	chr5:112879414-112879415
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:112873639..112875869-chr5:112878944..112880732,3	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs57295502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60321322	1.00[AMR][1000 genomes]
rs6869784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73240957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73240966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73240968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73240973	1.00[AMR][1000 genomes]
rs73246999	1.00[AMR][1000 genomes]
rs73248814	1.00[AMR][1000 genomes]
rs7727209	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882720	chr5:112859994-112911165	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv882721	chr5:112859994-112963488	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv882722	chr5:112868878-112899573	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv882723	chr5:112868878-112911165	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv882724	chr5:112868878-112933202	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112850400-112904000	Weak transcription	Psoas Muscle	Psoas
2	chr5:112850600-112908400	Weak transcription	Colonic Mucosa	Colon
3	chr5:112851600-112893200	Weak transcription	Fetal Brain Male	brain
4	chr5:112851600-112902800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr5:112852400-112882200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr5:112852400-112882200	Weak transcription	Fetal Heart	heart
7	chr5:112853200-112882400	Weak transcription	Brain Angular Gyrus	brain
8	chr5:112858800-112882000	Weak transcription	Brain Substantia Nigra	brain
9	chr5:112858800-112882200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr5:112860400-112882200	Weak transcription	Colon Smooth Muscle	Colon
11	chr5:112862800-112891200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr5:112864200-112882200	Weak transcription	Stomach Mucosa	stomach
13	chr5:112867000-112882000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr5:112867000-112888200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr5:112867000-112910000	Weak transcription	Right Ventricle	heart
16	chr5:112867200-112880600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr5:112867200-112882400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr5:112867200-112903400	Weak transcription	Pancreas	Pancrea
19	chr5:112867200-112904000	Weak transcription	Lung	lung
20	chr5:112867200-112904200	Weak transcription	Aorta	Aorta
21	chr5:112867200-112909800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr5:112867200-112909800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr5:112867200-112910000	Weak transcription	Esophagus	oesophagus
24	chr5:112867400-112882200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr5:112867400-112888000	Weak transcription	HSMMtube	muscle
26	chr5:112867400-112888800	Weak transcription	Ovary	ovary
27	chr5:112867400-112926000	Weak transcription	Small Intestine	intestine
28	chr5:112867400-112933000	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr5:112867600-112882600	Weak transcription	Fetal Brain Female	brain
30	chr5:112867600-112891200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr5:112868000-112879600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr5:112868000-112893400	Strong transcription	Dnd41	blood
33	chr5:112868400-112893600	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr5:112868600-112886400	Strong transcription	Liver	Liver
35	chr5:112868600-112911400	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr5:112869200-112910000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr5:112869400-112881000	Weak transcription	Fetal Intestine Small	intestine
38	chr5:112869800-112884200	Weak transcription	Fetal Kidney	kidney
39	chr5:112870200-112930800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr5:112871200-112882200	Weak transcription	NH-A	brain
41	chr5:112871600-112881400	Strong transcription	Fetal Muscle Leg	muscle
42	chr5:112872000-112904000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr5:112872000-112915000	Weak transcription	Hela-S3	cervix
44	chr5:112872200-112882000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr5:112872600-112880400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr5:112873000-112883200	Strong transcription	Fetal Thymus	thymus
47	chr5:112873000-112894000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr5:112873000-112900600	Strong transcription	Primary T cells fromperipheralblood	blood
49	chr5:112873400-112908800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr5:112873600-112879600	Strong transcription	Primary hematopoietic stem cells	blood

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