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Variant report
Variant
rs73781730
Chromosome Location
chr6:149620302-149620303
allele
A/C
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:5)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
(count:5 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr6:149617347..149620525-chr6:149621010..149624915,3
MCF-7
breast:
2
chr6:149617752..149621421-chr6:149622523..149625158,3
K562
blood:
3
chr6:149619314..149622625-chr6:149634430..149636159,3
K562
blood:
4
chr6:149619251..149620814-chr6:149634430..149637387,2
K562
blood:
5
chr6:149618848..149621708-chr6:149625417..149626920,2
K562
blood:
No data
No data
No data
Variant related genes
Relation type
ENSG00000216265
Chromatin interaction
Extended variants information (count: 3 )
Associated traits (count: 0)
rSNPs within LD-proxies of this variant (count:1)
rs_ID
r
2
[population]
rs56001917
0.83[AFR][1000 genomes]
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv1024776
chr6:149398652-149654593
Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh
TF binding regionCpG islandChromatin interactive regionlncRNA
17 gene(s)
inside rSNPs
diseases
2
nsv1015360
chr6:149609804-149649982
Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats
TF binding regionCpG islandChromatin interactive regionlncRNA
10 gene(s)
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
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