Variant report

Variant	rs73782232
Chromosome Location	chr5:113738910-113738911
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs56247741	0.84[AFR][1000 genomes]
rs73782227	1.00[AFR][1000 genomes]
rs73782230	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113731800-113739800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr5:113731800-113743400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr5:113732000-113742600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr5:113733000-113740200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:113736000-113742800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr5:113738000-113739800	Enhancers	Liver	Liver
7	chr5:113738800-113739200	Enhancers	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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