Variant report

Variant	rs73782539
Chromosome Location	chr5:124302113-124302114
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10051075	1.00[EUR][1000 genomes]
rs61712564	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73782544	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73782559	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73782561	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73782563	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882822	chr5:124250018-124449375	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830474	chr5:124263628-124431299	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv599657	chr5:124284253-124330522	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124299000-124306800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:124300000-124305600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:124300000-124306800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr5:124300000-124311800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:124301800-124302200	Enhancers	H1 Cell Line	embryonic stem cell
6	chr5:124301800-124302400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr5:124301800-124302400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr5:124301800-124302400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr5:124301800-124302400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr5:124301800-124302600	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr5:124301800-124303000	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr5:124301800-124304600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr5:124302000-124302400	Enhancers	H9 Cell Line	embryonic stem cell
14	chr5:124302000-124302400	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr5:124302000-124302400	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr5:124302000-124307800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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