Variant report

Variant	rs73783857
Chromosome Location	chr5:116071103-116071104
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs57438420	0.83[AFR][1000 genomes]
rs58088942	0.83[AFR][1000 genomes]
rs73783818	0.94[AFR][1000 genomes]
rs73783852	0.94[AFR][1000 genomes]
rs73784324	1.00[AFR][1000 genomes]
rs73784331	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763490	chr5:115918339-116138525	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830456	chr5:115969066-116170718	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv527974	chr5:115987168-116303678	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv462403	chr5:115994775-116284378	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv599485	chr5:115994775-116284378	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1030056	chr5:116008971-116278725	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1033140	chr5:116035131-116314673	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116068400-116076600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr5:116068800-116071200	Enhancers	Rectal Smooth Muscle	rectum
3	chr5:116069000-116071200	Enhancers	Fetal Lung	lung
4	chr5:116069200-116071200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr5:116069400-116071200	Enhancers	Duodenum Smooth Muscle	Duodenum
6	chr5:116069400-116071400	Enhancers	Fetal Heart	heart
7	chr5:116069600-116071200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:116070200-116073800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr5:116070200-116074000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr5:116070400-116071200	Enhancers	Brain Anterior Caudate	brain
11	chr5:116070400-116071200	Enhancers	Stomach Smooth Muscle	stomach
12	chr5:116070400-116071400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr5:116070400-116074000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:116070400-116074200	Weak transcription	Ovary	ovary
15	chr5:116070400-116074800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr5:116070600-116073400	Weak transcription	Fetal Muscle Trunk	muscle
17	chr5:116070600-116073400	Weak transcription	Lung	lung
18	chr5:116070600-116073600	Weak transcription	Esophagus	oesophagus
19	chr5:116070600-116073800	Weak transcription	Brain Hippocampus Middle	brain
20	chr5:116070600-116074000	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr5:116070600-116074000	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr5:116070600-116074000	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr5:116070600-116074000	Weak transcription	Left Ventricle	heart
24	chr5:116070600-116074000	Weak transcription	Right Atrium	heart
25	chr5:116070600-116074200	Weak transcription	Placenta	Placenta
26	chr5:116070600-116076200	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr5:116070600-116076600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr5:116070800-116073200	Weak transcription	Fetal Brain Male	brain
29	chr5:116070800-116073200	Weak transcription	Fetal Brain Female	brain
30	chr5:116070800-116073800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr5:116070800-116073800	Weak transcription	Brain Cingulate Gyrus	brain
32	chr5:116070800-116074200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr5:116070800-116074200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr5:116070800-116074400	Weak transcription	Brain Substantia Nigra	brain
35	chr5:116071000-116073200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr5:116071000-116073200	Weak transcription	Colon Smooth Muscle	Colon
37	chr5:116071000-116073200	Weak transcription	Fetal Muscle Leg	muscle
38	chr5:116071000-116073200	Weak transcription	Fetal Stomach	stomach
39	chr5:116071000-116073400	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr5:116071000-116074000	Weak transcription	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links