Variant report

Variant	rs73784284
Chromosome Location	chr5:124475260-124475261
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1371372	1.00[AMR][1000 genomes]
rs2408378	1.00[AMR][1000 genomes]
rs41320050	1.00[AMR][1000 genomes]
rs61258184	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784272	1.00[AMR][1000 genomes]
rs73784274	1.00[AMR][1000 genomes]
rs73784286	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784293	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784297	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7732057	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830475	chr5:124387292-124550256	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv599658	chr5:124459547-124513012	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124470800-124476400	Weak transcription	HUVEC	blood vessel
2	chr5:124471000-124475600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr5:124471000-124475600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:124471000-124476000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:124471000-124476000	Weak transcription	NHDF-Ad	bronchial
6	chr5:124471000-124476200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr5:124471000-124476400	Weak transcription	Osteobl	bone
8	chr5:124471000-124478400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:124471400-124476200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr5:124471400-124476200	Weak transcription	NH-A	brain
11	chr5:124471400-124484600	Weak transcription	HSMM	muscle
12	chr5:124474000-124476600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:124474200-124476000	Weak transcription	Fetal Intestine Small	intestine
14	chr5:124474200-124476200	Weak transcription	Fetal Intestine Large	intestine
15	chr5:124474200-124476800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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