Variant report

Variant	rs73784974
Chromosome Location	chr6:161213905-161213906
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1853023	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1853024	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784975	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784976	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784977	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784982	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758089	chr6:160372244-161234665	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	esv2759484	chr6:160372244-161234665	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv3352911	chr6:161140543-161324358	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv830853	chr6:161180005-161376481	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2422347	chr6:161211171-161442377	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv886815	chr6:161213047-161258658	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161211600-161216400	Weak transcription	Esophagus	oesophagus
2	chr6:161211600-161216400	Weak transcription	Placenta	Placenta
3	chr6:161211800-161214800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr6:161212200-161214000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:161212200-161214200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:161212400-161214000	Enhancers	HMEC	breast
7	chr6:161212800-161214200	Flanking Active TSS	K562	blood
8	chr6:161212800-161215200	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr6:161213000-161214000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:161213000-161214200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:161213000-161214200	Enhancers	NHEK	skin
12	chr6:161213600-161214200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:161213600-161215000	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr6:161213600-161215000	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr6:161213800-161214000	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr6:161213800-161214200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:161213800-161215000	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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