Variant report

Variant	rs73788213
Chromosome Location	chr6:166707828-166707829
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs58377461	0.83[ASN][1000 genomes]
rs6934274	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73788208	0.83[ASN][1000 genomes]
rs73788209	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73788210	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73788211	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73788215	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7740961	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755225	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886934	chr6:166642850-166747572	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv886935	chr6:166704744-166726566	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166705800-166709400	Enhancers	Brain Cingulate Gyrus	brain
2	chr6:166706000-166711000	Enhancers	Brain Substantia Nigra	brain
3	chr6:166706200-166710600	Enhancers	Brain Angular Gyrus	brain
4	chr6:166706400-166709400	Enhancers	Brain Hippocampus Middle	brain
5	chr6:166706600-166709600	Enhancers	Brain Anterior Caudate	brain
6	chr6:166707200-166708400	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr6:166707400-166709000	Enhancers	Fetal Intestine Large	intestine
8	chr6:166707400-166709000	Enhancers	Fetal Thymus	thymus
9	chr6:166707600-166708200	Enhancers	Duodenum Mucosa	Duodenum
10	chr6:166707600-166708600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:166707600-166708600	Enhancers	Fetal Intestine Small	intestine
12	chr6:166707600-166708800	Enhancers	Primary hematopoietic stem cells	blood
13	chr6:166707800-166708200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr6:166707800-166709400	Enhancers	Primary B cells from cord blood	blood
15	chr6:166707800-166709400	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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