Variant report

Variant	rs73788803
Chromosome Location	chr6:147471509-147471510
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11964531	1.00[AMR][1000 genomes]
rs11967097	1.00[AMR][1000 genomes]
rs34309227	1.00[AMR][1000 genomes]
rs56110944	1.00[AMR][1000 genomes]
rs6570780	1.00[AMR][1000 genomes]
rs6921730	1.00[AMR][1000 genomes]
rs6937426	1.00[AMR][1000 genomes]
rs73786878	1.00[AMR][1000 genomes]
rs73786890	1.00[AMR][1000 genomes]
rs73786893	1.00[AMR][1000 genomes]
rs73786895	1.00[AMR][1000 genomes]
rs73786898	1.00[AMR][1000 genomes]
rs73786900	1.00[AMR][1000 genomes]
rs73786902	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019245	chr6:147350834-147609776	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538467	chr6:147350834-147609776	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886751	chr6:147354092-147490398	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv886752	chr6:147443480-147729477	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147463600-147472200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:147464200-147475200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:147464200-147475400	Weak transcription	HSMM	muscle
4	chr6:147469800-147471600	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr6:147469800-147473400	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr6:147470800-147471800	Weak transcription	Fetal Intestine Large	intestine
7	chr6:147470800-147471800	Weak transcription	Fetal Intestine Small	intestine
8	chr6:147471000-147472800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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