Variant report

Variant	rs73794429
Chromosome Location	chr5:145157492-145157493
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17103754	1.00[EUR][1000 genomes]
rs56063484	1.00[EUR][1000 genomes]
rs56808087	1.00[EUR][1000 genomes]
rs57484295	1.00[EUR][1000 genomes]
rs73794428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021851	chr5:145106686-145187560	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145105400-145179000	Weak transcription	Pancreas	Pancrea
2	chr5:145109400-145194400	Weak transcription	Colonic Mucosa	Colon
3	chr5:145111400-145166800	Weak transcription	K562	blood
4	chr5:145114000-145163400	Weak transcription	Small Intestine	intestine
5	chr5:145138000-145157800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr5:145139000-145165400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr5:145140000-145157800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr5:145141200-145194400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr5:145142400-145162400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr5:145147400-145161800	Weak transcription	Lung	lung
11	chr5:145148800-145166600	Weak transcription	Fetal Heart	heart
12	chr5:145152000-145167200	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr5:145152200-145171000	Weak transcription	Stomach Mucosa	stomach
14	chr5:145154200-145157800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr5:145154400-145159800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr5:145154600-145157800	Weak transcription	Primary hematopoietic stem cells	blood
17	chr5:145154600-145166600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr5:145154600-145169600	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr5:145155000-145158800	Enhancers	Muscle Satellite Cultured Cells	--
20	chr5:145155400-145167200	Weak transcription	Right Atrium	heart
21	chr5:145156000-145160400	Weak transcription	Brain Substantia Nigra	brain
22	chr5:145156000-145171400	Weak transcription	Aorta	Aorta
23	chr5:145156200-145157600	Enhancers	Placenta Amnion	Placenta Amnion
24	chr5:145156200-145160600	Weak transcription	Brain Hippocampus Middle	brain
25	chr5:145156400-145160600	Weak transcription	HUVEC	blood vessel
26	chr5:145156400-145166000	Weak transcription	Fetal Lung	lung
27	chr5:145156400-145167200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr5:145156800-145157600	Strong transcription	Fetal Intestine Small	intestine
29	chr5:145156800-145157600	Enhancers	Right Ventricle	heart
30	chr5:145156800-145158200	Strong transcription	Gastric	stomach
31	chr5:145156800-145158400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr5:145156800-145160400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr5:145157000-145158000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr5:145157000-145158000	Weak transcription	HSMM	muscle
35	chr5:145157000-145158200	Weak transcription	Osteobl	bone
36	chr5:145157000-145158600	Strong transcription	Rectal Mucosa Donor 29	rectum
37	chr5:145157000-145161400	Weak transcription	HepG2	liver
38	chr5:145157000-145167000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr5:145157000-145167800	Weak transcription	NH-A	brain
40	chr5:145157200-145157600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr5:145157200-145157600	Enhancers	Fetal Muscle Trunk	muscle
42	chr5:145157200-145157600	Enhancers	Left Ventricle	heart
43	chr5:145157200-145157800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr5:145157200-145158200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr5:145157200-145158400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr5:145157200-145158400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr5:145157200-145158400	ZNF genes & repeats	Esophagus	oesophagus
48	chr5:145157200-145158400	ZNF genes & repeats	Fetal Stomach	stomach
49	chr5:145157200-145161000	Weak transcription	Adipose Nuclei	Adipose
50	chr5:145157200-145161400	Weak transcription	Duodenum Mucosa	Duodenum

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