Variant report

Variant	rs73796438
Chromosome Location	chr4:7126858-7126859
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:7124347..7127288-chr4:7130183..7132382,4	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11930414	0.82[ASN][1000 genomes]
rs11930448	0.82[ASN][1000 genomes]
rs11938272	0.82[ASN][1000 genomes]
rs11938388	0.82[ASN][1000 genomes]
rs11945234	0.82[ASN][1000 genomes]
rs16843076	0.82[ASN][1000 genomes]
rs28569016	0.82[ASN][1000 genomes]
rs35320981	0.82[ASN][1000 genomes]
rs4082844	0.82[ASN][1000 genomes]
rs4082845	0.82[ASN][1000 genomes]
rs4689600	0.82[ASN][1000 genomes]
rs4689601	0.82[ASN][1000 genomes]
rs4689602	0.82[ASN][1000 genomes]
rs56396760	0.82[ASN][1000 genomes]
rs57977765	0.82[ASN][1000 genomes]
rs61429941	0.82[ASN][1000 genomes]
rs62291199	0.82[ASN][1000 genomes]
rs62291200	0.82[ASN][1000 genomes]
rs6832757	0.82[ASN][1000 genomes]
rs6833153	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6833564	0.82[ASN][1000 genomes]
rs6836708	0.82[ASN][1000 genomes]
rs7378101	0.82[ASN][1000 genomes]
rs73796429	0.82[ASN][1000 genomes]
rs73796430	0.82[ASN][1000 genomes]
rs73796431	0.82[ASN][1000 genomes]
rs73796433	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73796436	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73796437	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73796440	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34033	chr4:6973270-7390621	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	esv2757919	chr4:6988148-7269901	Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	esv2759221	chr4:6988148-7269901	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv428436	chr4:6988148-7269901	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv469847	chr4:7003525-7168441	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
6	nsv878531	chr4:7006541-7129556	Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	nsv878535	chr4:7093834-7135912	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv461191	chr4:7102597-7129001	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv878536	chr4:7102597-7142868	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
10	nsv878537	chr4:7102597-7153642	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
11	nsv878538	chr4:7102597-7158467	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	nsv470007	chr4:7109082-7142970	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv593558	chr4:7109083-7136998	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	nsv829850	chr4:7112509-7314016	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
15	nsv878539	chr4:7121880-7163405	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7105800-7176000	Weak transcription	Right Atrium	heart
2	chr4:7117800-7133400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:7123200-7128400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr4:7124800-7129800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr4:7125200-7127800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:7125400-7132800	Enhancers	Fetal Muscle Leg	muscle
7	chr4:7126200-7127600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
8	chr4:7126400-7127000	Enhancers	Duodenum Smooth Muscle	Duodenum
9	chr4:7126400-7127000	Enhancers	Fetal Brain Male	brain
10	chr4:7126400-7127200	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr4:7126400-7127200	Enhancers	Esophagus	oesophagus
12	chr4:7126400-7127400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr4:7126400-7127400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr4:7126400-7127400	Enhancers	Fetal Lung	lung
15	chr4:7126400-7127400	Enhancers	Fetal Stomach	stomach
16	chr4:7126400-7127400	Enhancers	HSMMtube	muscle
17	chr4:7126400-7127400	Enhancers	NHLF	lung
18	chr4:7126400-7127600	Enhancers	Muscle Satellite Cultured Cells	--
19	chr4:7126400-7127600	Enhancers	Liver	Liver
20	chr4:7126400-7127600	Enhancers	Ovary	ovary
21	chr4:7126400-7127800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr4:7126600-7127000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr4:7126600-7127000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr4:7126600-7127000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr4:7126600-7127000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr4:7126600-7127000	Enhancers	Psoas Muscle	Psoas
27	chr4:7126600-7127000	Active TSS	Stomach Smooth Muscle	stomach
28	chr4:7126600-7127000	Enhancers	NHDF-Ad	bronchial
29	chr4:7126600-7127000	Flanking Active TSS	Osteobl	bone
30	chr4:7126600-7127200	Enhancers	iPS-20b Cell Line	embryonic stem cell
31	chr4:7126600-7127200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr4:7126600-7127200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr4:7126600-7127200	Enhancers	Pancreas	Pancrea
34	chr4:7126600-7127200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
35	chr4:7126600-7127200	Enhancers	NHEK	skin
36	chr4:7126600-7127400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr4:7126600-7127400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr4:7126600-7127400	Enhancers	Adipose Nuclei	Adipose
39	chr4:7126600-7127400	Enhancers	Colon Smooth Muscle	Colon
40	chr4:7126600-7127400	Enhancers	Duodenum Mucosa	Duodenum
41	chr4:7126600-7127400	Enhancers	Fetal Kidney	kidney
42	chr4:7126600-7127400	Enhancers	A549	lung
43	chr4:7126600-7127400	Enhancers	NH-A	brain
44	chr4:7126600-7127800	Enhancers	Gastric	stomach
45	chr4:7126600-7127800	Enhancers	Stomach Mucosa	stomach
46	chr4:7126800-7127000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr4:7126800-7127000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr4:7126800-7127000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr4:7126800-7127000	Enhancers	Colonic Mucosa	Colon
50	chr4:7126800-7127000	Enhancers	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links