Variant report

Variant	rs73796555
Chromosome Location	chr4:7414014-7414015
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:7412059..7414681-chr4:7420210..7422240,3	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs28411133	0.83[ASN][1000 genomes]
rs6821852	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73796554	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916610	chr4:7238883-7731946	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv593569	chr4:7291363-7626136	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1011547	chr4:7318232-7637410	Active TSS ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv537017	chr4:7318232-7637410	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1003679	chr4:7319111-7449262	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv469758	chr4:7370083-7546250	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
7	nsv878560	chr4:7402284-7475114	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
8	nsv878561	chr4:7402284-7544610	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7411400-7414400	Enhancers	Colon Smooth Muscle	Colon
2	chr4:7411400-7415000	Enhancers	Fetal Brain Male	brain
3	chr4:7411800-7414400	Enhancers	Rectal Smooth Muscle	rectum
4	chr4:7412600-7415800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:7413000-7415000	Enhancers	Brain Germinal Matrix	brain
6	chr4:7413200-7414200	Enhancers	Brain Cingulate Gyrus	brain
7	chr4:7413200-7414200	Enhancers	Fetal Lung	lung
8	chr4:7413200-7414400	Enhancers	Brain Substantia Nigra	brain
9	chr4:7413400-7414200	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr4:7413400-7414400	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr4:7413400-7414400	Enhancers	Fetal Brain Female	brain
12	chr4:7413400-7414600	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chr4:7413600-7414200	Enhancers	Aorta	Aorta
14	chr4:7413600-7414400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr4:7413600-7414600	Bivalent Enhancer	Fetal Muscle Leg	muscle
16	chr4:7413600-7418200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr4:7413800-7414200	Enhancers	Brain Anterior Caudate	brain
18	chr4:7413800-7414200	Flanking Active TSS	Stomach Smooth Muscle	stomach
19	chr4:7413800-7414800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
20	chr4:7414000-7414400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr4:7414000-7414400	Enhancers	Fetal Heart	heart
22	chr4:7414000-7414600	Enhancers	Brain Hippocampus Middle	brain
23	chr4:7414000-7414600	Bivalent Enhancer	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links