Variant report

Variant	rs73798033
Chromosome Location	chr5:151550524-151550525
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs56023602	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58015776	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58393037	1.00[AMR][1000 genomes]
rs60253952	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60883836	0.82[AFR][1000 genomes]
rs6881089	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6883512	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73795748	0.87[AFR][1000 genomes]
rs73796393	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73798027	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73798043	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73798050	0.82[AFR][1000 genomes]
rs73798056	1.00[AMR][1000 genomes]
rs73798057	1.00[AMR][1000 genomes]
rs73798922	1.00[AMR][1000 genomes]
rs7708592	1.00[AMR][1000 genomes]
rs7718285	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9918224	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760935	chr5:151463117-151586051	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv883040	chr5:151471642-151596273	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151548800-151551600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:151549000-151550800	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr5:151549400-151551000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:151549600-151550600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr5:151550000-151552000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:151550200-151551800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr5:151550400-151550800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr5:151550400-151551600	Weak transcription	Ovary	ovary
9	chr5:151550400-151551800	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr5:151550400-151551800	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr5:151550400-151554000	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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