Variant report

Variant	rs73798832
Chromosome Location	chr4:16082455-16082456
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:16082435-16082612	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr4:16082072-16082604	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr4:16082343-16082519	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
PROM1	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs56824492	1.00[AMR][1000 genomes]
rs73798826	1.00[AMR][1000 genomes]
rs73798839	1.00[AMR][1000 genomes]
rs73798846	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv998299	chr4:16031459-16226466	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv1004821	chr4:16055996-16830629	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv537046	chr4:16055996-16830629	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:16067600-16083200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr4:16069800-16083600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:16070200-16083200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr4:16070400-16083600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr4:16077800-16083400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr4:16077800-16083600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr4:16078000-16083600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr4:16078200-16083200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr4:16079400-16082600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr4:16080200-16082800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr4:16080200-16083600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr4:16080200-16083600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr4:16080200-16083600	Weak transcription	Gastric	stomach
14	chr4:16080400-16083400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr4:16080400-16083800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr4:16080600-16082600	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr4:16080600-16083200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr4:16080600-16083400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr4:16080600-16083600	Weak transcription	Right Atrium	heart
20	chr4:16080800-16083200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr4:16080800-16083200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr4:16080800-16083200	Enhancers	Primary hematopoietic stem cells	blood
23	chr4:16080800-16083200	Weak transcription	Colonic Mucosa	Colon
24	chr4:16080800-16083600	Weak transcription	Pancreas	Pancrea
25	chr4:16081000-16083200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr4:16081000-16083600	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr4:16081200-16083200	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr4:16081400-16083400	Weak transcription	Stomach Mucosa	stomach
29	chr4:16081800-16083600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr4:16082000-16082800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr4:16082200-16082600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr4:16082200-16082600	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr4:16082200-16082600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
34	chr4:16082200-16082600	Bivalent Enhancer	Fetal Stomach	stomach
35	chr4:16082200-16082600	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
36	chr4:16082400-16082600	Enhancers	Fetal Brain Male	brain
37	chr4:16082400-16082600	Bivalent Enhancer	Fetal Muscle Leg	muscle

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