Variant report

Variant	rs73800943
Chromosome Location	chr4:22421045-22421046
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs55846611	0.82[AFR][1000 genomes]
rs60866742	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73112127	0.87[AMR][1000 genomes]
rs73112132	0.87[AMR][1000 genomes]
rs73800942	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73800969	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv878752	chr4:22414023-22501043	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22371600-22449800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:22383200-22438000	Weak transcription	Lung	lung
3	chr4:22383600-22442800	Weak transcription	A549	lung
4	chr4:22385400-22430400	Weak transcription	Psoas Muscle	Psoas
5	chr4:22386000-22446600	Weak transcription	Fetal Thymus	thymus
6	chr4:22388200-22432400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr4:22388200-22442800	Weak transcription	Brain Germinal Matrix	brain
8	chr4:22388400-22473600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr4:22388800-22469600	Weak transcription	Colonic Mucosa	Colon
10	chr4:22389200-22473600	Weak transcription	Fetal Brain Male	brain
11	chr4:22390600-22423600	Weak transcription	Duodenum Mucosa	Duodenum
12	chr4:22390600-22439600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr4:22390600-22456200	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr4:22390600-22459800	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr4:22390800-22421400	Weak transcription	HepG2	liver
16	chr4:22390800-22429400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr4:22393000-22435200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr4:22393400-22444800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr4:22393600-22459800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr4:22393800-22446400	Weak transcription	NH-A	brain
21	chr4:22393800-22453000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr4:22397000-22428400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr4:22398400-22423200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr4:22399800-22442800	Weak transcription	Fetal Brain Female	brain
25	chr4:22400000-22448000	Weak transcription	Left Ventricle	heart
26	chr4:22400800-22422000	Weak transcription	HSMMtube	muscle
27	chr4:22400800-22429200	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr4:22400800-22430000	Weak transcription	Adipose Nuclei	Adipose
29	chr4:22400800-22449600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr4:22400800-22461800	Weak transcription	Gastric	stomach
31	chr4:22401000-22425000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr4:22401200-22431000	Weak transcription	Ovary	ovary
33	chr4:22401400-22423600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr4:22405000-22424200	Weak transcription	Fetal Kidney	kidney
35	chr4:22405400-22422600	Weak transcription	NHEK	skin
36	chr4:22405400-22446000	Weak transcription	Pancreas	Pancrea
37	chr4:22406800-22425800	Weak transcription	Primary T cells from cord blood	blood
38	chr4:22412800-22446000	Weak transcription	Thymus	Thymus
39	chr4:22414600-22430000	Weak transcription	Fetal Heart	heart
40	chr4:22415200-22430200	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr4:22415400-22423600	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr4:22416800-22449600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr4:22417600-22442200	Weak transcription	Hela-S3	cervix
44	chr4:22417800-22436200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr4:22418000-22435200	Strong transcription	Liver	Liver
46	chr4:22418400-22424000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr4:22418400-22425200	Weak transcription	Osteobl	bone
48	chr4:22418400-22426400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr4:22418800-22426000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr4:22418800-22426200	Strong transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links