Variant report

Variant	rs73801154
Chromosome Location	chr4:22697357-22697358
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16873075	1.00[AMR][1000 genomes]
rs16873140	1.00[AMR][1000 genomes]
rs57759839	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59752337	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6842894	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73801152	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73801153	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73801155	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv821634	chr4:22427074-22865948	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv829883	chr4:22666326-22842517	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22694400-22699200	Active TSS	Duodenum Mucosa	Duodenum
2	chr4:22695000-22697800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr4:22696200-22697600	Enhancers	Fetal Intestine Large	intestine
4	chr4:22696800-22698000	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr4:22697000-22698800	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr4:22697200-22697800	Enhancers	Liver	Liver
7	chr4:22697200-22697800	Enhancers	HepG2	liver
8	chr4:22697200-22698800	Active TSS	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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