Variant report

Variant	rs73801363
Chromosome Location	chr5:167156990-167156991
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10038056	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10038079	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10050810	0.86[ASN][1000 genomes]
rs10057680	0.85[ASN][1000 genomes]
rs10062974	0.92[EUR][1000 genomes]
rs10079574	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10516037	0.85[EUR][1000 genomes]
rs56322524	0.85[EUR][1000 genomes]
rs61168576	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1032559	chr5:167070888-167210684	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1027805	chr5:167082800-167285008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167148600-167157000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:167152600-167170000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:167153000-167165800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr5:167154800-167157000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr5:167155600-167158000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr5:167155800-167158000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chr5:167155800-167158400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr5:167156000-167157400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:167156000-167158000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr5:167156000-167158000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr5:167156000-167158000	Enhancers	NH-A	brain
12	chr5:167156000-167158000	Enhancers	NHDF-Ad	bronchial
13	chr5:167156000-167158400	Enhancers	HMEC	breast
14	chr5:167156000-167158400	Enhancers	HSMM	muscle
15	chr5:167156000-167158400	Enhancers	NHEK	skin
16	chr5:167156000-167160400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr5:167156200-167157800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr5:167156200-167158000	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr5:167156200-167158000	Enhancers	Osteobl	bone
20	chr5:167156400-167157000	Weak transcription	Adipose Nuclei	Adipose
21	chr5:167156400-167157400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr5:167156400-167158200	Enhancers	Muscle Satellite Cultured Cells	--
23	chr5:167156600-167157400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr5:167156600-167157800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr5:167156600-167158000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr5:167156800-167157200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr5:167156800-167157400	Enhancers	H9 Cell Line	embryonic stem cell
28	chr5:167156800-167157800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr5:167156800-167158000	Enhancers	A549	lung
30	chr5:167156800-167158000	Enhancers	HSMMtube	muscle
31	chr5:167156800-167158400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr5:167156800-167158400	Enhancers	Hela-S3	cervix
33	chr5:167156800-167158600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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