Variant report

Variant	rs73802022
Chromosome Location	chr4:16265833-16265834
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:16046306..16048088-chr4:16265445..16267791,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10025014	0.81[ASN][1000 genomes]
rs10027456	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10212713	0.81[ASN][1000 genomes]
rs12502431	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12502603	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs203438	0.82[ASN][1000 genomes]
rs2109889	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34159213	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004821	chr4:16055996-16830629	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv537046	chr4:16055996-16830629	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv537047	chr4:16182060-16375787	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv537048	chr4:16226406-16375787	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:16235400-16272800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr4:16238200-16266000	Weak transcription	Fetal Brain Male	brain
3	chr4:16242200-16267800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr4:16245600-16266000	Weak transcription	Brain Angular Gyrus	brain
5	chr4:16252800-16266600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr4:16252800-16267400	Weak transcription	Pancreas	Pancrea
7	chr4:16254800-16268800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr4:16256200-16270800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr4:16256400-16266400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr4:16256400-16270600	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr4:16258200-16278600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr4:16258400-16267400	Weak transcription	Gastric	stomach
13	chr4:16258400-16268000	Weak transcription	Esophagus	oesophagus
14	chr4:16258400-16268000	Weak transcription	Fetal Muscle Trunk	muscle
15	chr4:16258400-16270600	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr4:16258400-16271200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr4:16258600-16267400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr4:16258600-16268800	Weak transcription	Brain Hippocampus Middle	brain
19	chr4:16258600-16270600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr4:16258600-16272000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr4:16258800-16267400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr4:16258800-16267400	Weak transcription	Fetal Intestine Small	intestine
23	chr4:16258800-16268000	Weak transcription	Fetal Stomach	stomach
24	chr4:16259000-16271000	Weak transcription	Primary hematopoietic stem cells	blood
25	chr4:16259200-16266200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr4:16259200-16271000	Weak transcription	Adipose Nuclei	Adipose
27	chr4:16259400-16270600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr4:16259400-16270800	Weak transcription	Fetal Muscle Leg	muscle
29	chr4:16259400-16272200	Weak transcription	Fetal Intestine Large	intestine
30	chr4:16261600-16272200	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr4:16264400-16268600	Enhancers	Primary B cells from cord blood	blood
32	chr4:16264800-16267400	Weak transcription	Primary B cells from peripheral blood	blood
33	chr4:16264800-16269600	Weak transcription	Left Ventricle	heart
34	chr4:16265000-16270600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr4:16265800-16266400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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