Variant report

Variant	rs73805397
Chromosome Location	chr5:178448593-178448594
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:178445660..178448153-chr5:178448435..178450460,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs55691377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56100628	1.00[AMR][1000 genomes]
rs58269428	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58334712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58341826	1.00[AMR][1000 genomes]
rs58812551	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73806847	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73806850	1.00[AMR][1000 genomes]
rs73806852	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73806870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73806871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73806873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73806876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73806877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73806878	0.93[AFR][1000 genomes]
rs73806881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73806887	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73806890	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73806891	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73806892	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73806893	1.00[AMR][1000 genomes]
rs73806894	1.00[AMR][1000 genomes]
rs73806908	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73806909	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73806911	1.00[AMR][1000 genomes]
rs73806913	1.00[AMR][1000 genomes]
rs73806914	1.00[AMR][1000 genomes]
rs73806915	1.00[AMR][1000 genomes]
rs73807256	1.00[AMR][1000 genomes]
rs73807257	1.00[AMR][1000 genomes]
rs73807258	1.00[AMR][1000 genomes]
rs73807262	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883219	chr5:178390237-178454118	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv883220	chr5:178394717-178454118	ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv883221	chr5:178410538-178454118	Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1024560	chr5:178415364-178917595	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv537975	chr5:178415364-178917595	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv817413	chr5:178415365-179020558	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
7	nsv1033597	chr5:178423101-178752095	Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv1018650	chr5:178428743-178515196	Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
9	nsv1024994	chr5:178429975-178505167	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
10	nsv1025616	chr5:178429975-178515196	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
11	nsv1026351	chr5:178429975-178535309	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
12	nsv1031829	chr5:178442633-178658706	Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178448400-178450200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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