Variant report

Variant	rs73818384
Chromosome Location	chr4:55551778-55551779
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:55551469..55552431-chr4:55706923..55707730,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17084614	0.87[AMR][1000 genomes]
rs17084661	0.87[AMR][1000 genomes]
rs55643815	0.87[AMR][1000 genomes]
rs55703521	0.87[AMR][1000 genomes]
rs56037117	0.87[AMR][1000 genomes]
rs6814083	0.87[AMR][1000 genomes]
rs6835928	0.87[AMR][1000 genomes]
rs72550821	0.87[AMR][1000 genomes]
rs73134083	0.87[AMR][1000 genomes]
rs73135814	0.87[AMR][1000 genomes]
rs73818386	0.87[AMR][1000 genomes]
rs7697550	0.87[AMR][1000 genomes]
rs9683978	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999400	chr4:55143598-55776995	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv3367952	chr4:55437113-55724644	Bivalent/Poised TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv1009516	chr4:55548449-55560839	Flanking Active TSS Weak transcription Genic enhancers Enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55537600-55554000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:55545600-55575800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr4:55545800-55562000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr4:55546800-55558000	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:55548000-55561600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:55549000-55555200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr4:55549200-55559200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr4:55549400-55552000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr4:55549800-55551800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr4:55550000-55552200	Enhancers	Brain Anterior Caudate	brain
11	chr4:55550400-55552000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr4:55550400-55553400	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr4:55550600-55552800	Weak transcription	Primary B cells from cord blood	blood
14	chr4:55550600-55553600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr4:55550800-55553600	Weak transcription	Fetal Thymus	thymus
16	chr4:55551000-55552600	Enhancers	Brain Substantia Nigra	brain
17	chr4:55551000-55554400	Enhancers	Primary hematopoietic stem cells	blood
18	chr4:55551000-55554400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr4:55551200-55552400	Enhancers	Brain Hippocampus Middle	brain
20	chr4:55551200-55553600	Weak transcription	Primary T cells from cord blood	blood
21	chr4:55551200-55554200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr4:55551400-55552000	Weak transcription	Primary B cells from peripheral blood	blood
23	chr4:55551400-55552200	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr4:55551400-55552200	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr4:55551400-55554200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr4:55551600-55552200	Enhancers	Brain Angular Gyrus	brain
27	chr4:55551600-55552200	Enhancers	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links