Variant report

Variant	rs73818629
Chromosome Location	chr4:57707746-57707747
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17087206	1.00[AMR][1000 genomes]
rs55859938	1.00[AMR][1000 genomes]
rs55912219	1.00[AMR][1000 genomes]
rs56799195	1.00[AMR][1000 genomes]
rs58103239	1.00[AMR][1000 genomes]
rs59515004	1.00[AMR][1000 genomes]
rs60907988	1.00[AMR][1000 genomes]
rs6826911	1.00[AMR][1000 genomes]
rs6846900	1.00[AMR][1000 genomes]
rs73818648	1.00[AMR][1000 genomes]
rs73818650	1.00[AMR][1000 genomes]
rs73818657	1.00[AMR][1000 genomes]
rs73818828	1.00[AMR][1000 genomes]
rs73819055	1.00[AMR][1000 genomes]
rs73819060	1.00[AMR][1000 genomes]
rs73819061	1.00[AMR][1000 genomes]
rs73819063	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv1012287	chr4:57652778-57853485	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv1012125	chr4:57668229-57865803	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:57707600-57707800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
2	chr4:57707600-57709400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:57707600-57709600	Weak transcription	Adipose Nuclei	Adipose
4	chr4:57707600-57709600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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