Variant report
| Variant | rs73819275 |
|---|---|
| Chromosome Location | chr3:21087523-21087524 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:21086967..21088509-chr3:21091717..21094188,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs55924061 | 0.83[AFR][1000 genomes] |
| rs56007827 | 1.00[AMR][1000 genomes] |
| rs58251464 | 0.94[AFR][1000 genomes] |
| rs73819253 | 1.00[AMR][1000 genomes] |
| rs73819271 | 1.00[AMR][1000 genomes] |
| rs73819272 | 1.00[AMR][1000 genomes] |
| rs73819274 | 1.00[AMR][1000 genomes] |
| rs73819276 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73819277 | 1.00[AMR][1000 genomes] |
| rs73819279 | 1.00[AMR][1000 genomes] |
| rs73819280 | 1.00[AMR][1000 genomes] |
| rs73819281 | 1.00[AMR][1000 genomes] |
| rs73819282 | 1.00[AMR][1000 genomes] |
| rs73819283 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv876608 | chr3:21008710-21203048 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv998068 | chr3:21050191-21212603 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv2422219 | chr3:21064893-21220097 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv589880 | chr3:21083096-21144601 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 5 | nsv589881 | chr3:21083096-21173989 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 6 | nsv460463 | chr3:21083096-21179332 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 7 | nsv589882 | chr3:21083096-21179332 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 8 | nsv470472 | chr3:21087219-21179332 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:21086800-21108800 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
