Variant report

Variant	rs73820019
Chromosome Location	chr3:24649762-24649763
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11921095	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2082902	0.89[AFR][1000 genomes]
rs6550883	0.86[EUR][1000 genomes]
rs6550884	0.86[EUR][1000 genomes]
rs6782538	0.86[EUR][1000 genomes]
rs6782649	0.86[EUR][1000 genomes]
rs6793344	0.82[EUR][1000 genomes]
rs7634247	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs920117	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999384	chr3:24525345-24656873	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24643800-24650200	Weak transcription	Aorta	Aorta
2	chr3:24647800-24649800	Weak transcription	Brain Germinal Matrix	brain
3	chr3:24648400-24654600	Weak transcription	Fetal Intestine Small	intestine
4	chr3:24648600-24650000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:24648800-24650200	Enhancers	NHDF-Ad	bronchial
6	chr3:24649400-24650200	Enhancers	Adipose Nuclei	Adipose
7	chr3:24649400-24650600	Enhancers	Colon Smooth Muscle	Colon
8	chr3:24649600-24650200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:24649600-24650800	Enhancers	Fetal Lung	lung
10	chr3:24649600-24651200	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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