Variant report

Variant	rs73825425
Chromosome Location	chr4:76174533-76174534
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17000320	1.00[AMR][1000 genomes]
rs56000827	1.00[AMR][1000 genomes]
rs59557605	1.00[AMR][1000 genomes]
rs73825414	1.00[AMR][1000 genomes]
rs73825419	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73825426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73827031	1.00[AMR][1000 genomes]
rs73827054	1.00[AMR][1000 genomes]
rs73827055	1.00[AMR][1000 genomes]
rs73827062	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005324	chr4:75689880-76233555	Bivalent/Poised TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv537142	chr4:75689880-76233555	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1010552	chr4:76064415-76325430	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv1850883	chr4:76065572-76194403	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv594686	chr4:76139891-76212995	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv968038	chr4:76153468-76175173	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv594687	chr4:76154064-76502748	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76173000-76175400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr4:76173000-76175400	Enhancers	HUVEC	blood vessel
3	chr4:76173600-76174800	Enhancers	Sigmoid Colon	Sigmoid Colon
4	chr4:76173600-76174800	Enhancers	Stomach Mucosa	stomach
5	chr4:76173800-76175400	Enhancers	Fetal Intestine Large	intestine
6	chr4:76174000-76174600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr4:76174000-76174800	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr4:76174000-76185200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr4:76174200-76174800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:76174200-76174800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr4:76174200-76174800	Enhancers	Fetal Intestine Small	intestine
12	chr4:76174200-76174800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
13	chr4:76174200-76177600	Enhancers	Colon Smooth Muscle	Colon
14	chr4:76174400-76174600	Enhancers	Hela-S3	cervix
15	chr4:76174400-76174800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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